A new version of snpStatsWriter is up on CRAN. It includes a new function,
write.snphap(), for writing snphap files, and a brief vignette has been added, my first vignette written in markdown with knitr.
I’m not absolutely sure I want to learn another markdown syntax, I spend so much time in Org mode that translating from one to another is a pain, but I wanted to give knitr a go and markdown is friendlier than Sweave-like syntax. Perhaps next time I will try ravel to combine org-mode and knitr.